Hey welsh,
I wasn't aware they made the k100 past 1992. Sounds exactly like my issue though. I've gotten it to a manageable point where it actually runs pretty good. Here is a list of everything I did:
Description of issue:
----Engine misfires from 1k to 3k RPM. Misfire does not occur when engine is cold. There is a hesitation in power around 3k RPM. Misfire is most apparent when engine is held at 2k RPM, and sometimes (infrequently) a somewhat loud "click" sound occurs followed by a temporary drop in RPM (without moving the throttle). The misfiring seems to stop after the power hesitation and the engine runs well and smoothly above 3k - 3.2k rpm. The misfire occurs under power (in gear / moving) as well, with somewhat noticeable drops in power.
----Maybe once a week or less, the engine will give a loud backfire out the tailpipe.
----There was a time when the bike ran correctly, with little to no misfiring.
Things that have I've checked / replaced:
-New FPR installed
-New spark plug wires (NGK, non-metal caps)
-New / correct spark plugs installed (Bosch XR5DC)
-New fuel filter and in-tank hoses
-New Injectors (Bosch Type II) - helped a lot (I believe bad / very dirty injectors were the main problem)
-New air-related rubber parts all around
-Cleaned fuel pump pre-filter and sucked out some dirt from gas tank via a syringe
-The chip in the Motronic computer is stock BMW, not aftermarket.
-TPS adjustment (setting to 0.5v helped issue, currently set correctly at ~0.375v)
-CO potentiometer adjusted to max idle then back a turn
-checked coils for jumping sparks (none, even when doused with water while idling)
-synced all TB air bypass screws (helped. used one vacuum gauge, so not precisely)
-bit of oil consumption, probably not cause of misfire (maybe a quart per 1300-1500 mi.)
-no noise associated with misfire aside from the infrequent 'click' sound at ~2k rpm
-re-applied heatsink paste (liberally) to the ignition amplifier
-air filter is new (about 1.5k miles)
-no air leaks apparent. replaced ALL rubber intake system parts (except the hose on the back of the TBs)
---also replaced plastic intake boots and O-rings (cleaned engine surface beneath boots prior to installation)
-measured resistances / voltage of components at Motronic connection pins (all normal)
---one of the resistances from the CO pot was different from the other, but I think that is due to the tachometer being spliced in with one of those connections.
-tested compression, all cylinders normal, 130, 130, 140, 140 (passed)
-tested fuel pressure, 33-38 psi (passed) (had gauge on backside of fuel rail)
-tested coolant temp sensor (passed)
-tested voltage to injectors from harness (all passed)
-tested fuel spray pattern from injectors (passed)
-tested coils resistances (both passed within spec, hot and cold)
-tested resistance of coil harness wires to ignition amp / motronic connector (passed)
-tested hall sensor via heat gun before start / installed known good one (passed)
-tested TPS for linear voltage from throttle closed to open (passed)
-Last recorded mileage: 46mpg, all highway miles, average speed of 80-85 ///////// 37mpg, combined highway and street
Things I have yet to do:
-balance the butterflies (they still look factory set based on the blue paint, didn't want to mess with them)
-somehow check the Motronic computer
---the motronic computer had stopped sending the ground signal to turn the cooling fan on (hence the switch for the fan on the dash), which makes me a little suspect of it as a cause for the misfire.
-replace the rubber connecting hose on the back of the TBs. (i've ordered this and will put it on when it gets here.
AGAIN: I believe bad / very dirty injectors were the main problem. As soon as I replaced these with new (reconditioned) Bosch type 2 injectors, the issue was VERY noticeably improved. There was no more stuttering or dropping cylinders on clutch release. It was still missing a little in the low RPM though.
Anyways, after I did all that, I took it to the BMW shop and had them set the TPS, CO pot, and air bypass screws as I don't have the right tools for that. The current running state of the bike is pretty good, but I'm still looking in to replacing that last rubber piece on the back of the TBs, and I would also like to find a friend that would let me swap motronic computers to see if the issue persists.
I would start with the injectors before you mess with anything else. Hope this helps.