I'm not sure if my diagram is the same as your machine, but I think so.
Note: Remember, when using the multi meter that although the black lead is always left connected into the COM port of the meter, You have to move the red test lead over from the Volts Port to the Ohms post, when switching the scales on the meter from DC volts, around to Ohms. Common sense, I know, but all to easy to forget when changing test functions.
As I see it, if"
#1 you disconnect all the primary wires from the coils and
#2 you disconnect the wire harness connector from the Ignition control module.
You would find pin #14 in the harness connector for the ICU, should be a Black/Blue wire.
you would find the Black/Blue wire removed from the ign. coil.
Connect one lead from the ohm meter to the harness end pin receptacle and the other lead of the ohm meter to the wire that was removed from the coil spade. Put the Ohm meter on the lowest scale. The resistance from one end of that Black/Blue wire to the other should be zero or very close to it.
Use the same procedure on pin #9 at the ICU harness connector testing through the Black/Red wire to the end removed at the other coil. Again, expect zero or very close resistance across the Black/red wire.
Next, at the coils there should be a green/yellow that connects at each coil. Connecting the ohm meter across the 2 coil spades on the green/yellow the resistance again is zero.
Additionally leaving one ohmmeter lead on one of those green/yellow spades, move the other ohmmeter wire to pin #10 at the ICU connector (also Green/Yellow). Same result, no resistance.
Following that, if pin#10 checked out correct, remove the second test lead from the coil end of Green/yellow and move it to the back of the handlebar kill switch, green yellow wire there. All should show very low or no resistance. Now, with one lead still on the green/yellow wire at the kill switch, connect the other test lead to the green wire at the kill switch. With the switch "on" the resistance should be near zero, switch the kill switch off, resistance will jump up to infinity or HI, switch it back on, resistance should fall back to zero.
Last, check the Tan ground wire spade at each coil with one end of the ohmmeter with the opposite lead of the ohmmeter lead at the negative battery post, the frame metal, the ground strap at the side of the trans case....etc.......all zero or very low.
If all that checks out, reconnect the Green/Yellows at the coils. Reconnect the Black/Red at it's coil & reconnect the black blue at the other coil. (I believe these only go one way and cannot be reversed with the Green/Yellow ones. For now, leave the Tan ground leads off the coils.
Now, you have the primary circuits on your coils fully connected to the ICU harness
Go to the ICU harness and test with the ohmmeter between pin #14 & #10. This should be very close to equal what you read at the coils (3 Ohms?)
Next test between Pin #9 & Pin #10, again looking for nearly the same value as your original primary side coil spec. (3 Ohms?).
Once all those continuity tests are complete, reconnect everything (including the tans at the middle spade on the coils).
Change your red mult-imeter lead from the ohms port, back to the Volts port. Switch the meter scale to 20V DC.
Turn the IGN switch to "RUN", Turn the kill switch on.
Test the voltage across the battery + to - , record the value with the switches on.
Remove the test points & connect the red lead to Green/Yellow at either coil. Connect the black test lead to the negative battery terminal. The voltage should be the same as battery voltage or slightly less. Leave the leads connected, cycle the IGN/Kill switches several times look for the same readings at each "ON" cycle.